June 23, 2015 Liz Amdahl

Axon Quantification

Product Overview

Indica Labs introduces the most advanced image analysis tool for axon detection and quantification on whole slide images. The patent pending software detects, counts and measures axons and myelin areas in nerve cross-sections.

Since axon cross-sections are irregularly shaped, the algorithm uses patent pending image processing techniques to detect each axon’s minimum diameter and median diameter. Once each axon has been measured the software generates important statistics including the average inner and outer diameters, average G-Ratio, average perimeter, total axon area, total myelin area, and average myelin thickness. Additionally, it produces several histograms including an axon G-Ratio histogram.

The axon quantification tool integrates seamlessly into the   HALO™ platform which is compatible with a number of third party systems and   file formats.

Contact  info@indicalab.com for product demonstration and pricing information or  upload some images for a free trial.

Supported File Formats:


  • – Non Proprietary (JPG, TIF)
  • – 3D Histech (MRXS)
  • – Aperio (SVS, AFI, eSlideManager)
  • – Hamamatsu (NDPI, NDPIS)
  • – Leica (SVS, SCN, LIF)
  • – Mikroscan (TIF)
  • – Nikon (ND2)
  • – Olympus (VSI)
  • – Perkin Elmer (QPTIFF, Vectra TIF)
  • – Philips IMS
  • – Zeiss (CZI)

Don’t see the format you’re looking for? Contact us to make a request

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