June 23, 2015 Liz Amdahl

Break-Apart & Fusion FISH

Product Overview

Indica Labs’ Break-Apart & Fusion FISH module is one of several Insitu applications in what’s recognized as the industry’s most comprehensive ISH analytics platform.  This particular module reads multi-channel fluorescent images and quantifies break-apart assays and fusion assays in a fully automated fashion.

In the example above,  the software quantitates a fusion FISH assay on lung carcinoma. The algorithm recognizes copy pairs that are overlapping or within the user-specified range to constitute a fused pair. The software reports individual cell profiles including copy counts and fusion counts. It also reports overall averages across all cells in the region of analysis.

The Break-Apart & Fusion FISH quantification tool works with most microscope images and integrates seamlessly into the  HALO™ platform which is compatible with a number of third party systems and  file formats.

Contact info@indicalab.com for product demonstration and pricing information or upload some images for a free trial.

Supported File Formats:


  • – Non Proprietary (JPG, TIF)
  • – 3D Histech (MRXS)
  • – Aperio (SVS, AFI, eSlideManager)
  • – Hamamatsu (NDPI, NDPIS)
  • – Leica (SVS, SCN, LIF)
  • – Mikroscan (TIF)
  • – Nikon (ND2)
  • – Olympus (VSI)
  • – Perkin Elmer (QPTIFF, Vectra TIF)
  • – Philips IMS
  • – Zeiss (CZI)

Don’t see the format you’re looking for? Contact us to make a request

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