March 22, 2013 admin

Chromogenic RNA ISH

Product Overview

Indica Labs introduces the first whole slide image analysis tool for brightfield RNA ISH quantification. The patent pending software measures RNA probes on a per cell basis. The example above, shows cell nuclei (colored blue) and ISH signal (brown) that become highlighted in red/orange. The orange represents individual signals for their respective chromogens, while the red represents clustered signals that were counted as multiple signals.

The tool reports numerous metrics including cell counts, signal counts, avg signals per cell, signal sizes and optical densities, and histograms indicating the frequency of cells containing 0,1,2,3,4… signals.

The RNA ISH quantification tool integrates seamlessly into the   HALO™ platform which is compatible with a number of third party systems and    file formats.

Contact info@indicalab.com for product demonstration and pricing information or upload some images for a free trial.

Supported File Formats:


  • – Non Proprietary (JPG, TIF)
  • – 3D Histech (MRXS)
  • – Aperio (SVS, AFI, eSlideManager)
  • – Hamamatsu (NDPI, NDPIS)
  • – Leica (SVS, SCN, LIF)
  • – Mikroscan (TIF)
  • – Nikon (ND2)
  • – Olympus (VSI)
  • – Perkin Elmer (QPTIFF, Vectra TIF)
  • – Philips IMS
  • – Zeiss (CZI)

Don’t see the format you’re looking for? Contact us to make a request

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